Published Data

Title: Canopy Data and Applications Rescue Effort

Creator(s) Judy Cushing, Michelle Wallace, Noah Weiner, Nalini Nadkarni, Sharon McIntee, Anne McIntosh, http://orcid.org/0000-0001-8462-650X, Peter Lynn, http://orcid.org/0000-0003-1475-6741

Project Space: CanopyDB Preservation

Published Dataset: http://doi.org/10.5967/M04J0C60

Abstract:
These materials document a 'data rescue' effort undertaken as a collaboration between the leaders of the original research projects, students and staff at TESC, and the SEAD DataNet project. This effort involved gathering and organizing the existing materials, and a significant effort to annotate materials to enhance reusability.

The effort's scope included preserving the projects' web documentation, image archive, software products (executable and source) including a database generation tool and visualization software, paper publications, and the field study data recorded using databases generated using the projects' database generator tool.

In addition to preserving the original database files, the rescue effort converted all databases into a standard format (Software Independent Archiving of Relational Databases, http://www.eark-project.com/resources/specificationdocs/32-specification-for-siard-format-v20) and experimented with capturing a full virtual machine to provide a general mechanism to support live queries of the databases in the future.

The included poster from the 2015 AGU conference describes the early parts of the effort.

Our team wishes in particular to acknowledge the contributions of Michelle Wallace and Sharon McIntee, who had the primary responsibility for assembling materials, organizing them in SEAD, adding formal and informal (tag) annotations, and generating the SIARD and Virtual Machine forms of the databases.

Publication Date: Nov 14, 2017 10:38:01 AM

Title: CanopyDB Ecology Field Studies

Creator(s) multiple - see metadata at the sub-collection level

Project Space: CanopyDB Preservation

Published Dataset: http://doi.org/10.5967/M0862DKW

Abstract:
These studies were conducted using Ecological Informatics software developed, with support from the U.S. National Science Foundation, over more than a decade at The Evergreen State College (TESC) to address the needs of forest canopy researchers.


Y. Bar-Ness: Tasmanian Eucalyptus obliqua: Crown Structure and Arthropod Biodiversity
R. Dial: Borneo Insect Biomass and Count
R. Dial: Open Space in Canopy Structure
H. Ishii: Age-Related Development of Crown Structure
B. Lyons: Epiphytes and Hemlocks
E. Menendez Luquillo: Canopy Plot Visualization
G. Parker: Three-Dimensional Canopy Structure
T.Sanderson: Monteverde, Epiphyte Changes Over Time
D. Shaw: Mistletoe and Hemlocks
A. Sumida: Stick structure of Japanese chestnut
B.VanPelt: Thousand Year Chronosequence

Publication Date: Nov 14, 2017 10:24:22 AM

Title: DNR Leave Tree Project

Creator(s) Van Pelt, R., and N. M. Nadkarni

Project Space: CanopyDB Preservation

Published Dataset: http://doi.org/10.5967/M0CZ358V

Abstract:
The goal of the Evergreen-DNR Leave Tree Project is to help forest managers use results from forest canopy research to help determine which trees to leave when harvesting a stand of trees. This project hopes to articulate how statements of policy that determine which trees to leave, e.g., "leave those trees that increase wildlife habitat", might be made more specific, and to refine definitions terms used when specifying leave tree requirements, such as: complex structure, broken tops, large branches, crown gap, continuous crown.

The Leave Tree Project is currently gathering and analyzing data on how experts categorize crown shape and what they mean by certain commonly used terms such as "wildlife tree". We hope to develop an understanding of how crown structure relates to ecological values such as wildlife habitat. We are distributing a questionnaire and tree structure catalog to a panel to experts. The answers from the questionnaire will help us to determine commonalities that might be used to query our database for trees that satisfy certain structural features that, in turn, equate to particular ecological values.

Publication Date: Nov 14, 2017 10:18:28 AM

Title: CanopyDB Ecology Informatics Tools

Creator(s) Cushing et. al. (see internal documentation for details)

Project Space: CanopyDB Preservation

Published Dataset: http://doi.org/10.5967/M0HQ3X06

Abstract:
These applications were developed, with support from the U.S. National Science Foundation, over more than a decade at The Evergreen State College (TESC) to address the needs of forest canopy researchers.

The tools include:

Databank Database Generator: Graphical tool to generate ecological databases from standard and custom database templates. Generated database includes data entry forms, data dictionary, and Ecological Metadata Language (EML) documents.

CanopyView: An interactive visualization tool designed to view tree structure, canopy coverage, and other data stored in Databank-generated databases.

This publication also includes images that were stored in a web content management system operated as part of the project website. (Image annotations from that system have not been recovered).

Publication Date: Nov 14, 2017 10:11:38 AM

Title: CanopyDB Publications

Creator(s) multiple - see file-level documentation

Project Space: CanopyDB Preservation

Published Dataset: http://doi.org/10.5967/M0NG4NQH

Abstract:
These publications document the work by multiple research teams leveraging Ecological Informatics software developed over more than a decade at The Evergreen State College (TESC) to address the needs of forest canopy researchers.

Publication Date: Nov 14, 2017 9:59:24 AM

Title: Publications

Creator(s) multiple - see file-level documentation

Project Space: CanopyDB Preservation

Published Dataset: http://doi.org/10.5072/FK2F190X65

Abstract:
These publications document the work by multiple research teams leveraging Ecological Informatics software developed over more than a decade at The Evergreen State College (TESC) to address the needs of forest canopy researchers.

Publication Date: Nov 14, 2017 9:47:48 AM

Title: Videos of lofting and ground-hugging turbidity currents

Creator(s) http://orcid.org/0000-0002-7832-0528, James Buttles, http://orcid.org/0000-0001-5034-2189, David Mohrig, Eckart Meiburg

Project Space: Sediment Experimentalist Network

Published Dataset: http://doi.org/10.5967/M0Z0368W

Abstract:
Videos from experiments performed in 2015 at the University of Texas at Austin. These lofting videos are of experimental turbidity currents with light interstitial fluid, achieved by heating interstitial fluid to 31 deg. C and keeping ambient tank water at 23 deg. C. Sediment concentration is varied between 1.5%, 2%, and 3% in these flows. Ground-hugging flows have the same density (i.e. temperature) interstitial and ambient water and have 1.6% sediment concentration. See the table included with this dataset and Steel et al., 2017 for all experimental conditions and results.

These videos are meant to supplement results published in Steel, E., Buttles, J., Simms, A.R., Mohrig, D., and Meiburg, E., 2017, The role of buoyancy reversal in turbidite deposition and submarine fan geometry: Geology, 45(1), 35-38. doi: 10.1130/G38446.1

Publication Date: Oct 2, 2017 4:32:54 PM

Title: Videos of lofting and ground-hugging turbidity currents

Creator(s) James Buttles, http://orcid.org/0000-0001-5034-2189, David Mohrig, Eckart Meiburg

Project Space: Sediment Experimentalist Network

Published Dataset: http://doi.org/10.5072/FK23T9MK13

Abstract:
Videos from experiments performed in 2015 at the University of Texas at Austin. These lofting videos are of experimental turbidity currents with light interstitial fluid, achieved by heating interstitial fluid to 31 deg. C and keeping ambient tank water at 23 deg. C. Sediment concentration is varied between 1.5%, 2%, and 3% in these flows. Ground-hugging flows have the same density (i.e. temperature) interstitial and ambient water and have 1.6% sediment concentration. See the table included with this dataset and Steel et al., 2017 for all experimental conditions and results.

These videos are meant to supplement results published in Steel, E., Buttles, J., Simms, A.R., Mohrig, D., and Meiburg, E., 2017, The role of buoyancy reversal in turbidite deposition and submarine fan geometry: Geology, 45(1), 35-38. doi: 10.1130/G38446.1

Publication Date: Oct 2, 2017 11:58:55 AM

Title: TDB_12_1

Creator(s) http://orcid.org/0000-0002-9173-4602, http://orcid.org/0000-0002-4731-6200, Qi Li; Kyle Straub

Project Space: Sediment Experimentalist Network

Published Dataset: http://doi.org/10.5967/M03N21GX

Abstract:
TDB-12-1: Fan-delta experiment performed in Tulane University Delta Basin. Experiment evolved under constant forcings of water (0.17 l/s), sediment (0.00017 l/s), and sea-level rise rate 0.25 (mm/hr). Experiment run time was 1285 hr. Experiment used a strongly cohesive sediment that had a wide grain size distribution with a median diameter of 65 microns. Experiment performed to explore autogenic sediment transport and stratigraphy with topography monitored every 1 hour of run time.

Publication Date: Jul 26, 2017 8:44:39 PM

Title: TDB_13_1

Creator(s) http://orcid.org/0000-0002-9173-4602, http://orcid.org/0000-0002-4731-6200, Qi Li; Kyle Straub

Project Space: Sediment Experimentalist Network

Published Dataset: http://doi.org/10.5967/M07D2S7Q

Abstract:
TDB-13-1: Fan-delta experiment performed in Tulane University Delta Basin. Experiment evolved under constant forcings of water (0.17 l/s), sediment (0.00017 l/s), and sea-level rise rate (0.25 mm/hr). Experiment run time was 1000 hr. Experiment was divided into 2 stages. The first stage used a weakly cohesive sediment while the second stage used a moderately cohesive sediment. Both sediment mixtures had wide grain size distributions with a median diameter of 65 microns. Experiment performed to explore autogenic sediment transport and stratigraphy with topography monitored every 1 hour of run time.

Publication Date: Jul 26, 2017 7:13:38 PM

Title: TDB_14_2

Creator(s) http://orcid.org/0000-0002-9173-4602, http://orcid.org/0000-0002-4731-6200

Project Space: Sediment Experimentalist Network

Published Dataset: http://doi.org/10.5967/M0RF5S4H

Abstract:
TDB-14-2: Fan-delta experiment performed in Tulane University Delta Basin. Experiment evolved under constant forcings of water (0.17 l/s), sediment (0.00017 l/s), and long term sea-level rise rate (0.25 mm/hr). Experiment run time was 1170 hr. Experiment used a strongly cohesive sediment that had a wide grain size distribution with a median diameter of 65 microns. Superimposed on the long term sea-level rise were sea-level cycles. The experiment was split into 2 stages. The first stage had sea-level cycles with periods of 24.5 hrs and amplitudes of 6.125 mm. The second stage had sea-level cycles with periods of 24.5 hrs and amplitudes of 3.06 mm. Experiment performed to explore interaction of autogenic sediment transport with sea-level cycles and resulting stratigraphy with topography monitored every 1 hour of run time.

Publication Date: Jul 23, 2017 11:31:16 AM

Title: TDB_14_1

Creator(s) http://orcid.org/0000-0002-9173-4602, http://orcid.org/0000-0002-4731-6200

Project Space: Sediment Experimentalist Network

Published Dataset: http://doi.org/10.5967/M0MP51D5

Abstract:
TDB-14-1: Fan-delta experiment performed in Tulane University Delta Basin. Experiment evolved under constant forcings of water (0.17 l/s), sediment (0.00017 l/s), and long term sea-level rise rate (0.25 mm/hr). Experiment run time was 630 hr. Experiment used a strongly cohesive sediment that had a wide grain size distribution with a median diameter of 65 microns. Superimposed on the long term sea-level rise were sea-level cycles with periods of 98 hrs and amplitudes of 24.5 mm. Experiment performed to explore interaction of autogenic sediment transport with sea-level cycles and resulting stratigraphy with topography monitored every 1 hour of run time.

Publication Date: Jul 23, 2017 2:21:36 PM

Title: TDB_15_1

Creator(s) Liz Yu, http://orcid.org/0000-0002-4731-6200

Project Space: Sediment Experimentalist Network

Published Dataset: http://doi.org/10.5967/M00V89W1

Abstract:
TDB-15-1: Fan-delta experiment performed in Tulane University Delta Basin. Experiment evolved under constant forcings of water (0.17 l/s), sediment (0.00017 l/s), and long term sea-level rise rate (0.25 mm/hr). Experiment run time was 1170 hr. Experiment used a strongly cohesive sediment that had a wide grain size distribution with a median diameter of 65 microns. Superimposed on the long term sea-level rise were sea-level cycles. The experiment was split into 2 stages. The first stage had sea-level cycles with periods of 98 hrs and amplitudes of 3.06 mm. The second stage had sea-level cycles with periods of 24.5 hrs and amplitudes of 12.25 mm. Experiment performed to explore interaction of autogenic sediment transport with sea-level cycles and resulting stratigraphy with topography monitored every 1 hour of run time.

Publication Date: Jul 22, 2017 7:06:36 PM

Title: TDB-11-1

Creator(s) Yinan Wang, http://orcid.org/0000-0002-4731-6200

Project Space: Sediment Experimentalist Network

Published Dataset: http://doi.org/10.5967/M0D50K3T

Abstract:
TDB-11-1: Fan-delta experiment performed in Tulane University Delta Basin. Experiment evolved under constant forcings of water (0.902 l/s), sediment (0.011 l/s), and sea-level rise rate 5 mm/hr). Experiment run time was 77.2 hr. Experiment used non-cohesive sediment that was 70% by volume well sorted quartz sand with a median diameter of 110 microns and 30% by volume crushed coal with a median diameter of 400 microns. Experiment performed to explore autogenic sediment transport and stratigraphy with topography monitored every 2 minutes of run time.

Publication Date: Aug 19, 2017 9:55:06 AM

Title: TDB-10-2

Creator(s) Yinan Wang, http://orcid.org/0000-0002-4731-6200

Project Space: Sediment Experimentalist Network

Published Dataset: http://doi.org/10.5967/M0W37TFH

Abstract:
TDB-10-2: Fan-delta experiment performed in Tulane University Delta Basin. Experiment evolved under constant forcings of water (0.902 l/s), sediment (0.022 l/s), and sea-level rise rate 10 mm/hr). Experiment run time was 39.3 hr. Experiment used non-cohesive sediment that was 70% by volume well sorted quartz sand with a median diameter of 110 microns and 30% by volume crushed coal with a median diameter of 400 microns. Experiment performed to explore autogenic sediment transport and stratigraphy with topography monitored every 2 minutes of run time.

Publication Date: Jul 22, 2017 9:03:44 PM

Title: TDB-10-1

Creator(s) Yinan Wang, http://orcid.org/0000-0002-4731-6200

Project Space: Sediment Experimentalist Network

Published Dataset: http://doi.org/10.5967/M0HX19TT

Abstract:
TDB-10-1: Fan-delta experiment performed in Tulane University Delta Basin. Experiment evolved under constant forcings of water (0.451 l/s), sediment (0.011 l/s), and sea-level rise rate 5 mm/hr). Experiment run time was 78.2 hr. Experiment used non-cohesive sediment that was 70% by volume well sorted quartz sand with a median diameter of 110 microns and 30% by volume crushed coal with a median diameter of 400 microns. Experiment performed to explore autogenic sediment transport and stratigraphy with topography monitored every 2 minutes of run time.

Publication Date: Jul 21, 2017 10:51:26 AM

Title: CSDMS Test

Creator(s) http://orcid.org/0000-0001-8462-650X, http://orcid.org/0000-0002-8883-2826

Project Space: SEAD Testing

Published Dataset: http://doi.org/10.5072/FK2V69GH55

Abstract:
This is a test object

Publication Date: Jul 12, 2017 5:00:03 PM

Title: Supplemental Data for Chapter 3

Creator(s) Christopher R. Esposito

Project Space: Esposito Dissertation Data

Published Dataset: http://doi.org/10.5072/FK28054Q27

Abstract:
Data extracted from Humphreys and Abbott (1867) and Little and Biedenharn (2014)

Humphreys, C. A. and Abbot, L. H.: Report upon the physics and hydraulics of the Mississippi River, Corps of Topographical Engineers, United States Army, Washington., 1867.

Little, C. D. and Biedenharn, D. S.: Mississippi River Hydrodynamic and Delta Management Study (MRHDM)-Geomorphic Assessment, U.S. Army Corps of Engineers. 2014.

Publication Date: Jul 8, 2017 9:29:13 PM

Title: 2014 Backward-Facing Step Flume Experiments

Creator(s) http://orcid.org/0000-0002-8883-2826

Project Space: 2014 Backward-Facing Step Experiments

Published Dataset: http://doi.org/10.5967/M0TB150B

Abstract:
This dataset includes data from flume experiments run in 2014 at Arizona State University investigating bedload transport and turbulent structures downstream of a 3.81 cm backward-facing step. Two high-speed cameras captured bedload motion and motion of neutrally buoyant particles in the flow at 9 different distance downstream of the backward-facing step. Bedload transport data were collected using manual particle tracking techniques on the bedload images. Neutrally buoyant particle images were run through Particle Image Velocimetry algorithms to generate a two-dimensional field of fluid velocity vectors. Acoustic Doppler Velocimetry data were also recorded to refine fluid velocity measurements.

Data included herein:
(1) Raw bedload images (Sed_raw.zip & sed130.zip)
(2) Raw PIV images (PIV_all.zip)
(3) Bedload transport .csv files (Bedload_Flux_AllRuns.xlsx)
(4) Bedload time series (both downstream [DS] and cross-stream [CS]) .csv files
(5) Bedload Tracking Videos
(6) ADV files (ADV.zip)
(7) Bedload Tracking .csv files (Sediment_Tracking.zip)

This research is in collaboration with Dr. Mark Schmeeckle and was supported by a National Science Foundation research grant (award number: 1226288; PI: Mark Schmeeckle).

Questions regarding this dataset should be directed to Kate Leary (learykcp@gmail.com).

Publication Date: Jul 7, 2017 11:46:37 AM

Title: 2014 Backward-Facing Step Experiments

Creator(s) http://orcid.org/0000-0002-8883-2826

Project Space: 2014 Backward-Facing Step Experiments

Published Dataset: http://doi.org/10.5072/FK2XD0Z27F

Abstract:
This dataset includes data from flume experiments run in 2014 at Arizona State University investigating bedload transport and turbulent structures downstream of a backward-facing step. Two high-speed cameras captured bedload motion and motion of neutrally buoyant particles in the flow at 9 different distance downstream of the backward-facing step. Bedload transport data was collected using manual particle tracking techniques on the bedload images. Neutrally buoyant particle images were run through Particle Image Velocimetry algorithms to generate a two-dimensional field of fluid velocity vectors. Acoustic Doppler Velocimetry data was also recorded to refine fluid velocity measurements.

Data included in the this project space includes:
(1) Raw bedload images (Sed_raw.zip & sed130.zip)
(2) Raw PIV images (PIV_all.zip)
(3) Bedload transport .csv files (Bedload_Flux_AllRuns.xlsx)
(4) Bedload time series (both downstream [DS] and cross-stream [CS]) .csv files
(5) Bedload Tracking Videos
(6) ADV files (ADV.zip)
(7) Bedload Tracking .csv files (Sediment_Tracking.zip)

Publication Date: Jul 6, 2017 1:21:08 PM